PHC 6068: Biostatistical ComputingInstructors:Zhiguang Huo (zhuo@ufl.edu) TAs: Runzhi Zhang (runzhi.zhang@ufl.edu) Lecture time and room: Monday: 12:50-14:45, Room: HPNP G-301A Wednesday: 13:55-14:45, Room: HPNP G-301A Online synchronized/asynchronized option: See elearning website for zoom ID, both synchronous/asynchronous options are available Virtual office hours: https://ufl.zoom.us/j/94451437002 HZ: Monday 3:00-4:30pm ZR: Wednesday 3:00-4:30pm Syllabus: here. Courseweb: elearning. |
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| Date | Content | Materials | Note |
| Mon Aug 23 | Basics of R programming |
overview: slides basics: slides; R RMarkdown.Rmd |
HW 1 distributed |
| Wed Aug 25 | Writing functions in R |
slides; R |
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| Mon Aug 30 | Data manipulation (Tidyverse) |
slides; R |
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| Wed Sep 1 | Vectorized calculations |
slides; R |
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| Mon Sep 6 | Labor Day, no class! | HW 1 due, HW 2 distributed | |
| Wed Sep 8 | R graphics (basic) |
slides; R |
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| Mon Sep 13 | R graphics (advanced) |
ggplot2: slides; R
heatmap.2: slides; R |
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| Wed Sep 15 | HiPerGator |
Usage: slides
Optional: slides; video |
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| Mon Sep 20 | R Shiny | slides | HW 2 due, Midterm distributed |
| Wed Sep 22 | No class, take-home midterm exam | ||
| Mon Sep 27 | R packages | slides | Midterm due, Final project distributed |
| Wed Sep 29 | Rcpp | slides | |
| Mon Oct 4 | Github (guest lecture by Shancheng Song) | slides | HW 3 distributed |
| Wed Oct 6 | Matrix operation and Algebra review |
slides; R |
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| Mon Oct 11 | Dimension reduction |
slides; R |
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| Wed Oct 13 | Clustering method |
slides; R |
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| Mon Oct 18 | Linear models |
slides; R |
HW 4 distributed |
| Wed Oct 20 | Lasso and Ridge regression |
slides; R |
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| Mon Oct 25 | Generalized linear models |
slides; R |
HW 3 due |
| Wed Oct 27 | Mixed model |
slides; R |
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| Mon Nov 1 | Optimization |
slides; R |
HW 5 distributed |
| Wed Nov 3 | Simulate random variables |
slides; R |
HW 4 due |
| Mon Nov 8 | Simulation |
slides; R |
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| Wed Nov 10 | Bootstrapping |
slides; R |
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| Mon Nov 15 | Decision Trees and Cross validation |
slides; R |
HW 5 due, HW 6 distributed |
| Wed Nov 17 | Supervised machine learning (others) |
slides; R |
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| Mon Nov 22 | No class, work on HW and final projects | ||
| Wed Nov 24 | Thanksgiving! Eat food | ||
| Mon Nov 29 | No class | ||
| Wed Dec 1 | No class | HW 6 due, Final exam released | |
| Mon Dec 6 | No class, take home Finals | Final project due | |
| Wed Dec 8 | No class | Final exam due |