PHC 6068: Biostatistical ComputingInstructors:Zhiguang Huo (zhuo@ufl.edu) TAs: Xiulin Xie (xiulin.xie@ufl.edu) Lecture time and room: Monday: 12:50-14:45 Wednesday: 13:55-14:45 Via Zoom (Check out canvas website https://elearning.ufl.edu/ for the Zoom link) Office hours: Huo,Z: Monday 3:00-5:00pm Xie,X: Wednesday 3:00-5:00pm Via Zoom (https://ufl.zoom.us/j/98744965403) Syllabus: here. Courseweb: elearning. |
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| Date | Content | Materials | Note |
| Mon Aug 31 | Basics of R programming |
overview: slides basics: slides; R RMarkdown.Rmd |
HW 1 distributed |
| Wed Sep 2 | Writing functions in R |
slides; R |
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| Mon Sep 7 | Labor Day, no class! | ||
| Wed Sep 9 | Vectorized calculations |
slides; R |
|
| Mon Sep 14 | Data manipulation (Tidyverse) |
slides; R |
HW 1 due, HW 2 distributed |
| Wed Sep 16 | R graphics (basic) |
slides; R |
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| Mon Sep 21 | R graphics (advanced) |
ggplot2: slides; R
heatmap.2: slides; R |
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| Wed Sep 23 | HiPerGator |
Overview: video; slides
Usage: slides |
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| Mon Sep 28 | R packages | slides; R | HW 2 due, Final project distributed |
| Wed Sep 30 | Rcpp | slides; R | |
| Mon Oct 5 | Github | slides | Midterm distributed |
| Wed Oct 7 | Matrix operation and Algebra review | slides; R | |
| Mon Oct 12 | Dimension reduction | slides; R | Midterm due, HW 3 distributed |
| Wed Oct 14 | Clustering method | slides; R | |
| Mon Oct 19 | Linear models | slides; R | |
| Wed Oct 21 | Lasso and Ridge regression | slides; R | |
| Mon Oct 26 | Generalized linear models | slides; R | HW 3 due, HW 4 distributed |
| Wed Oct 28 | Mixed model | slides; R | |
| Mon Nov 2 | Optimization | slides; R | |
| Wed Nov 4 | Simulate random variables | slides; R | |
| Mon Nov 9 | Simulation | slides; R | HW 4 due, HW 5 distributed |
| Wed Nov 11 | No class, Veterans Day! | ||
| Mon Nov 16 | Bootstrapping and Permutation | slides; R | |
| Wed Nov 18 | Decision Tree | slides; R | |
| Mon Nov 23 | Cross validation | slides; R | HW 5 due, HW 6 distributed |
| Wed Nov 25 | Thanksgiving! Eat food | ||
| Mon Nov 30 | Monte Carlo methods | slides; R | |
| Wed Dec 2 | Markov Chain Monte Carlo | slides; R | |
| Mon Dec 7 | No class | ||
| Wed Dec 9 | No class | HW 6 due, Final exam released | |
| Mon Dec 14 | No class, take home Finals | Final project due | |
| Wed Dec 16 | No class | Final exam due |